API Reference

• Public Package API
• GFF/GTF Pipeline
  • benchmark_from_gff()
• Labels And Metrics
  • AnnotationMode
  • BenchmarkScope
  • LabelConfig
  • EvalMetrics
  • SEMANTIC_BOUNDARY_ORDER
  • semantic_boundary_label()
• Transcript Mapping
  • Public API
  • LocusMatchingMode
  • MatchClass
  • PredictionMatch
  • TranscriptMapping
  • map_transcripts()
  • build_paired_arrays()
  • export_mapping_table()
• Evaluation
  • StreamingBenchmark
  • benchmark_from_arrays()
• Global Metrics
  • compute_global_metrics()
  • compute_overlap_keepsets()
• Datasets
  • load_dataset()
  • list_datasets()
  • get_dataset_info()
  • LoadedDataset
• Weights & Biases Logging
  • log_benchmark_scalars()
  • log_benchmark_all_scalars()
  • log_benchmark_media()
  • log_benchmark_media_videos()
  • clear_benchmark_media_video_buffer()
  • init_wandb_with_presets()
• Plotting
  • compare_multiple_predictions()